Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants.
Identifieur interne : 000215 ( Main/Exploration ); précédent : 000214; suivant : 000216Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants.
Auteurs : Anne-Sophie Petitot [France] ; Alexis Dereeper [France] ; Corinne Da Silva [France] ; Julie Guy [France] ; Diana Fernandez [France]Source :
- Pathogens (Basel, Switzerland) [ 2076-0817 ] ; 2020.
Abstract
The plant-parasitic nematode Meloidogyne graminicola causes considerable damages to rice (Oryza sativa) culture. Resistance to M. graminicola in the related species Oryza glaberrima reduces root penetration by juveniles and stops further nematode development. M. graminicola genes expressed during O. sativa infection were previously characterized but no information is available about the molecular dialogue established with a resistant plant. We compared the M. graminicola transcriptomes of stage-two juveniles (J2s) before and during infection of susceptible or resistant rice. Among 36,121 M. graminicola genes surveyed, 367 were differentially expressed during infection of resistant or susceptible plants. Genes encoding cell wall-degrading enzymes, peptidases and neuropeptides were expressed for a longer time in resistant plants compared to susceptible plants. Conversely, genes related to nematode development were not activated in the resistant host. The majority of M. graminicola effector genes had similar expression patterns, whatever the host genotype. However, two venom allergen-like protein (VAP)-encoding genes were specifically induced in resistant plants and Mg-VAP1 silencing in J2s reduced their ability to colonize roots. This study highlighted that M. graminicola adapts its gene expression to the host susceptibility. Further investigation is required to assess the role of Mg-VAPs in the rice-nematode interaction.
DOI: 10.3390/pathogens9080644
PubMed: 32784493
PubMed Central: PMC7460394
Affiliations:
- France
- Languedoc-Roussillon, Occitanie (région administrative), Île-de-France
- Montpellier, Évry (Essonne)
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xml:lang="fr">France</country><wicri:regionArea>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Dereeper, Alexis" sort="Dereeper, Alexis" uniqKey="Dereeper A" first="Alexis" last="Dereeper">Alexis Dereeper</name><affiliation wicri:level="3"><nlm:affiliation>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><affiliation wicri:level="3"><nlm:affiliation>Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation></author><author><name sortKey="Guy, Julie" sort="Guy, Julie" uniqKey="Guy J" first="Julie" last="Guy">Julie Guy</name><affiliation wicri:level="3"><nlm:affiliation>Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation></author><author><name sortKey="Fernandez, Diana" sort="Fernandez, Diana" uniqKey="Fernandez D" first="Diana" last="Fernandez">Diana Fernandez</name><affiliation wicri:level="3"><nlm:affiliation>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author></analytic><series><title level="j">Pathogens (Basel, Switzerland)</title><idno type="ISSN">2076-0817</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The plant-parasitic nematode <i>Meloidogyne graminicola</i> causes considerable damages to rice (<i>Oryza sativa</i>) culture. Resistance to <i>M. graminicola</i> in the related species <i>Oryza glaberrima</i> reduces root penetration by juveniles and stops further nematode development. <i>M. graminicola</i> genes expressed during <i>O. sativa</i> infection were previously characterized but no information is available about the molecular dialogue established with a resistant plant. We compared the <i>M. graminicola</i> transcriptomes of stage-two juveniles (J2s) before and during infection of susceptible or resistant rice. Among 36,121 <i>M. graminicola</i> genes surveyed, 367 were differentially expressed during infection of resistant or susceptible plants. Genes encoding cell wall-degrading enzymes, peptidases and neuropeptides were expressed for a longer time in resistant plants compared to susceptible plants. Conversely, genes related to nematode development were not activated in the resistant host. The majority of <i>M. graminicola</i> effector genes had similar expression patterns, whatever the host genotype. However, two venom allergen-like protein (VAP)-encoding genes were specifically induced in resistant plants and <i>Mg-VAP1</i> silencing in J2s reduced their ability to colonize roots. This study highlighted that <i>M. graminicola</i> adapts its gene expression to the host susceptibility. Further investigation is required to assess the role of <i>Mg-VAPs</i> in the rice-nematode interaction.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32784493</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2076-0817</ISSN><JournalIssue CitedMedium="Print"><Volume>9</Volume><Issue>8</Issue><PubDate><Year>2020</Year><Month>Aug</Month><Day>08</Day></PubDate></JournalIssue><Title>Pathogens (Basel, Switzerland)</Title><ISOAbbreviation>Pathogens</ISOAbbreviation></Journal><ArticleTitle>Analyses of the Root-Knot Nematode (<i>Meloidogyne graminicola</i>) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E644</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/pathogens9080644</ELocationID><Abstract><AbstractText>The plant-parasitic nematode <i>Meloidogyne graminicola</i> causes considerable damages to rice (<i>Oryza sativa</i>) culture. Resistance to <i>M. graminicola</i> in the related species <i>Oryza glaberrima</i> reduces root penetration by juveniles and stops further nematode development. <i>M. graminicola</i> genes expressed during <i>O. sativa</i> infection were previously characterized but no information is available about the molecular dialogue established with a resistant plant. We compared the <i>M. graminicola</i> transcriptomes of stage-two juveniles (J2s) before and during infection of susceptible or resistant rice. Among 36,121 <i>M. graminicola</i> genes surveyed, 367 were differentially expressed during infection of resistant or susceptible plants. Genes encoding cell wall-degrading enzymes, peptidases and neuropeptides were expressed for a longer time in resistant plants compared to susceptible plants. Conversely, genes related to nematode development were not activated in the resistant host. The majority of <i>M. graminicola</i> effector genes had similar expression patterns, whatever the host genotype. However, two venom allergen-like protein (VAP)-encoding genes were specifically induced in resistant plants and <i>Mg-VAP1</i> silencing in J2s reduced their ability to colonize roots. This study highlighted that <i>M. graminicola</i> adapts its gene expression to the host susceptibility. Further investigation is required to assess the role of <i>Mg-VAPs</i> in the rice-nematode interaction.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Petitot</LastName><ForeName>Anne-Sophie</ForeName><Initials>AS</Initials><AffiliationInfo><Affiliation>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dereeper</LastName><ForeName>Alexis</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Da Silva</LastName><ForeName>Corinne</ForeName><Initials>C</Initials><Identifier Source="ORCID">0000-0002-7618-7831</Identifier><AffiliationInfo><Affiliation>Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guy</LastName><ForeName>Julie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fernandez</LastName><ForeName>Diana</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0003-1432-3129</Identifier><AffiliationInfo><Affiliation>IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>9-2012 Meloidogyne graminicola effectors</GrantID><Agency>CEA/Genoscope/IRD collaborative project</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>08</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Pathogens</MedlineTA><NlmUniqueID>101596317</NlmUniqueID><ISSNLinking>2076-0817</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">cell wall-degrading enzymes</Keyword><Keyword MajorTopicYN="N">cuticle</Keyword><Keyword MajorTopicYN="N">dual RNA-Seq</Keyword><Keyword MajorTopicYN="N">neuropeptide</Keyword><Keyword MajorTopicYN="N">plant-parasitic nematode</Keyword><Keyword MajorTopicYN="N">resistance</Keyword><Keyword MajorTopicYN="N">venom allergen-like protein</Keyword><Keyword MajorTopicYN="N">virulence effector</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>06</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>07</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>08</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>8</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>8</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>8</Month><Day>14</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32784493</ArticleId><ArticleId IdType="pii">pathogens9080644</ArticleId><ArticleId IdType="doi">10.3390/pathogens9080644</ArticleId><ArticleId IdType="pmc">PMC7460394</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Nat Biotechnol. 2008 Aug;26(8):909-15</Citation><ArticleIdList><ArticleId 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Mar;20(3):346-355</Citation><ArticleIdList><ArticleId IdType="pubmed">30315612</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>France</li></country><region><li>Languedoc-Roussillon</li><li>Occitanie (région administrative)</li><li>Île-de-France</li></region><settlement><li>Montpellier</li><li>Évry (Essonne)</li></settlement></list><tree><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Petitot, Anne Sophie" sort="Petitot, Anne Sophie" uniqKey="Petitot A" first="Anne-Sophie" last="Petitot">Anne-Sophie Petitot</name></region><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><name sortKey="Dereeper, Alexis" sort="Dereeper, Alexis" uniqKey="Dereeper A" first="Alexis" last="Dereeper">Alexis Dereeper</name><name sortKey="Fernandez, Diana" sort="Fernandez, Diana" uniqKey="Fernandez D" first="Diana" 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